Table 7 The values of the Jaccard index between sets of aligned pairs
From: AlfaPang: alignment free algorithm for pangenome graph construction
Dataset | pggb vs AlfaPang+ | Minigraph-Cactus vs AlfaPang+ | Minigraph-Cactus vs pggb |
|---|---|---|---|
S. cerevisiae 16 | 68.3 | 56.8 | 81.6 |
S. cerevisiae 32 | 72.9 | 59.9 | 80.0 |
S. cerevisiae 64 | 72.9 | 60.9 | 79.9 |
S. cerevisiae 118 | 76.5 | 64.4 | 77.2 |
S. cerevisiae 16* | 95.3 | 85.4 | 88.4 |
S. cerevisiae 32* | 95.8 | 85.1 | 87.2 |
S. cerevisiae 64* | 95.1 | 86.6 | 88.4 |
S. cerevisiae 118* | 94.6 | 87.1 | 88.4 |
E. coli 50 | 88.5 | 82.7 | 91.4 |
E. coli 100 | 84.3 | 69.8 | 74.1 |
E. coli 200 | 83.0 | 73.7 | 78.2 |
E. coli 400 | 77.4 | 70.5 | 84.5 |