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Table 4 Number of edges (in \(10^6\))

From: AlfaPang: alignment free algorithm for pangenome graph construction

Dataset

AlfaPang+

pggb

Minigraph-Cactus

S. cerevisiae 16

1.27

1.22

1.48

S. cerevisiae 32

2.47

2.48

3.05

S. cerevisiae 64

3.87

3.98

5.37

S. cerevisiae 118

5.11

5.49

7.68

S. cerevisiae 16*

1.37

1.23

1.47

S. cerevisiae 32*

2.63

2.46

3.03

S. cerevisiae 64*

3.85

3.93

5.26

S. cerevisiae 118*

5.08

5.43

7.37

E. coli 50

2.37

2.20

2.64

E. coli 100

2.40

2.45

3.65

E. coli 200

3.42

3.60

5.72

E. coli 400

4.52

4.53

8.16

  1. * Graphs constructed separately for each chromosome
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Algorithms for Molecular Biology

ISSN: 1748-7188