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Table 3 Number of nodes (in \(10^6\))

From: AlfaPang: alignment free algorithm for pangenome graph construction

Dataset

AlfaPang+

pggb

Minigraph-cactus

S. cerevisiae 16

0.92

0.89

1.08

S. cerevisiae 32

1.78

1.80

2.22

S. cerevisiae 64

2.75

2.85

3.86

S. cerevisiae 118

3.61

3.87

5.44

S. cerevisiae 16*

1.00

0.90

1.08

S. cerevisiae 32*

1.91

1.79

2.21

S. cerevisiae 64*

2.78

2.83

3.78

S. cerevisiae 118*

3.65

3.85

5.22

E. coli 50

1.74

1.62

1.93

E. coli 100

1.76

1.79

2.67

E. coli 200

2.49

2.61

4.13

E. coli 400

3.27

3.25

5.80

  1. * Graphs constructed separately for each chromosome
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Algorithms for Molecular Biology

ISSN: 1748-7188