AlfaPang: alignment free algorithm for pangenome graph construction

Table 1 Graph properties for selected values of k corresponding to specific rare k-mer fractions

rare k-mers fraction	0.01	0.02	0.03	0.05	0.10
E. coli 100
k	15	47	83	165	379
Fraction of sequence in private nodes	0.003	0.009	0.012	0.020	0.040
Max node coverage	244604	768	685	574	470
S. cerevisiae 64
k	11	27	45	77	163
Fraction of sequence in private nodes	0.000	0.003	0.005	0.009	0.020
Max node coverage	\(2.7\times 10^8\)	10894	6839	5116	3498

ISSN: 1748-7188