Table 7 Index and query statistics of pangenome query tools, as with Table 1 but with MEMO pivot as GRCh38 instead of T2T-CHM13

PanKmer

23.29

any

31-mer only

1, –, 3, –

1:54:43.45

8.04

KMC3-M

1,267.20

any

re-index

1, 2, 3, –

0:49:15.49

13.99

KMC3-C

18.05

any

re-index

1, –, 3, 4*

0:00:38.59

17.68

MEMO-M

1.94

re-index

any

1, 2, 3, –

0:00:59.60

3.51

MEMO-C

1.67

re-index

any

1, –, 3, –

0:00:08.26

3.51

MEMO-DC

0.76

re-index

any

–, –, –, 4

0:00:06.16

3.26