Fig. 6

MEMO conservation query on \(G_{1}\) [3, 10), half-open interval with query sequence CAGCTCA. (Left) Sequences for pangenome with \(G_{1}\) pivot. A matrix with rows capture presence/absence 3-mer values across each order. A.argmax, the per-column row with the first 1, is the conservation count for the 3-mers in the query region. (Right) Visual representation of 3-mer presence/absence across each order. 3-mers anchored to the same position relative to the query pivot subsequence follow the early stoppage behavior–once a k-mer is marked absent in an order, all k-mers in that position are also absent in subsequent lower orders