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Table 3 Cache-miss rates (in %) for compared methods on GRCh38 and T2T datasets with respect to number of threads

From: Fast, parallel, and cache-friendly suffix array construction

Method

Human (GRCh38)

Human (T2T)

1 thr

32 thr

64 thr

1 thr

32 thr

64 thr

caps-sa

24

32

37

43

53

60

parallel-divsufsort

59

60

61

60

61

62

parallel-dc3

72

68

68

72

68

68

divsufsort

51

-

-

52

-

-

  1. Reported numbers are the minimum of 3 runs to obviate operating system jitter. Lower is better, and the best result is highlighted