From: Fast, parallel, and cache-friendly suffix array construction
Method | Human (GRCh38) | Human (T2T) | ||||
---|---|---|---|---|---|---|
1 thr | 32 thr | 64 thr | 1 thr | 32 thr | 64 thr | |
caps-sa | 24 | 32 | 37 | 43 | 53 | 60 |
parallel-divsufsort | 59 | 60 | 61 | 60 | 61 | 62 |
parallel-dc3 | 72 | 68 | 68 | 72 | 68 | 68 |
divsufsort | 51 | - | - | 52 | - | - |