Table 2 Time- and memory-performance results for constructing sas (and lcp-array in case of caps-sa) with 32 threads
From: Fast, parallel, and cache-friendly suffix array construction
Dataset | Divsufsort | Parallel-divsufsort | Parallel-dc3 | Caps-sa |
|---|---|---|---|---|
Human (GRCh38) | 556 (25) | 273 (32) | 113 (110) | 93 (45) |
Human (T2T) | 575 (26) | 279 (34) | 119 (116) | 106 (48) |
CdBG (Human reads) | 722 (33) | 379 (44) | 149 (172) | 114 (61) |
Great white shark | 771 (36) | 410 (48) | 176 (186) | 121 (64) |
Axolotl | 10489 (236) | 3424 (311) | – | 1341 (848) |
Bacteria (1K) | 726 (33) | 437 (43) | 164 (172) | 259 (60) |