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Table 1 Runtime and memory usage comparison of all sketch-based methods

From: ESKEMAP: exact sketch-based read mapping

Tool

User time [s]

Memory [GB]

Total

Per mapping

eskemap

133,621

0.02

2

minimap2

26,232

0.55

4.5

Winnowmap2

9207

0.19

7

  1. The tools were called to map 32295 simulated PacBio Hifi sequencing reads on the T2T assembly of human chromosome Y. Runtimes are shown both as total values and normalized by the number of reported mapping positions
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Algorithms for Molecular Biology

ISSN: 1748-7188