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Table 4 Maximum memory (GB) used by the various compression algorithms

From: Compression algorithm for colored de Bruijn graphs

 

\(k=23\)

\(k=31\)

Dataset

ESS-color

KS

GGCAT

ESS-basic

ESS-color

GGCAT

ESS-basic

Ecoli100

1.2

0.9

1.5

1.2

1.1

1.4

1

Ecoli10

0.6

3.2

0.8

1.1

0.6

0.8

1

Fungi20

5.4

3.2

4.8

5.9

4.3

3.9

6

Gut9

174.6*

50.6

87.2**

33.2

121

78.2

119

HumRNA19

26.8

6.0

8.8

9.1

12.1

10.2

7

  1. The (*) and (**) annotations are the same as in Table 3
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Algorithms for Molecular Biology

ISSN: 1748-7188