| | \(k=23\) | \(k=31\) |
|---|
Dataset | ESS-color | KS | GGCAT | ESS-basic | ESS-color | GGCAT | ESS-basic |
|---|
Ecoli100 | 14.8 | 11.6 | 0.7 | 6.3 | 20.7 | 0.7 | 27 |
Ecoli10 | 2.6 | 7.0 | 0.3 | 0.9 | 2.6 | 0.3 | 2 |
Fungi20 | 59.1 | 7.0 | 3.3 | 7.3 | 76 | 3.3 | 25 |
Gut9 | 1101* | 148.5 | 37.8** | 234 | 611.6 | 92.2 | 341 |
HumRNA19 | 31.9 | 10.5 | 21.2 | 31 | 60.1 | 15.0 | 39 |
- For the Gut9 ESS-color run with \(k=23\) (marked with *), we used an unoptimized implementation of the color matrix generation step, since SSHash was not working as expected. For GGCAT on Gut9 with \(k=23\) (denoted by **), the original run crashed because of exceeding the number of open files allowed by the operating system. We therefore re-ran GGCAT using our simplitigs as a starting point, which allowed the run to complete. However, the time shown here does not include the time we used to construct the simplitigs
