Table 1 Dataset characteristics
Source | type | C | M | n. \(k\)-mers \(\times 10^6\) (% single color) | n. simplitigs \(\times 10^6\) | ||
|---|---|---|---|---|---|---|---|
\(k=23\) | \(k=31\) | \(k=23\) | \(k=31\) | ||||
E. coli | assemblies | 100 | 542,545 | 27 (30%) | 31 (31%) | 0.5 | 0.5 |
E. coli | assemblies | 10 | 826 | 13 (38%) | 14 (41%) | 0.2 | 0.2 |
Fungi | assemblies | 20 | 13,227 | 394 (93%) | 409 (93%) | 1.8 | 1.7 |
Gut | metagenome reads | 9 | 511 | 2,236 (67%) | 2,477 (70%) | 76 | 95 |
Human | RNA-seq reads | 19 | 9654 | 120 (71%) | 103 (75%) | 7.2 | 10 |