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Fig. 8 | Algorithms for Molecular Biology

Fig. 8

From: Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Fig. 8

One of the bubbles found only by Ks_2.2.0 with the corresponding sequences mapped to the reference human genome and visualised using the UCSC Genome Browser. The first two lines correspond to the sequences of, respectively, the shortest (exon exclusion variant) and longest paths (exon inclusion variant) of the bubble mapped to the genome. The blue line is the Refseq annotation. The last line shows the annotated SINE and LINE sequences (transposable elements)

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Algorithms for Molecular Biology

ISSN: 1748-7188